Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs55695515 chr8:121420087 T/C 4.06E-6 177 27.2 25.67 19.87 KM Plot
PCPG rs55697150 chr2:61590612 A/G 6.44E-5 177 24.1 30.93 10.3 KM Plot
PCPG rs55700120 chr7:105148460 G/T 5.04E-5 178 20.17 28.95 2.28 KM Plot
PCPG rs55701318 chr7:105175738 G/A 7.98E-5 171 20.2 29.88 2.28 KM Plot
PCPG rs55706607 chr2:61595504 T/C 7.12E-5 175 24.3 29.88 10.3 KM Plot
PCPG rs55715412 chr22:21293974 TAA/T 7.74E-5 177 12.93 31.47 25.2 KM Plot
PCPG rs55740553 chr7:105159551 A/G 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs55750405 chr11:18160457 G/A 4.87E-6 172 26.53 21.78 8.33 KM Plot
PCPG rs55760111 chr3:195724449 C/T 1.53E-5 175 24.5 32.92 13.38 KM Plot
PCPG rs55765119 chr10:29846944 A/G 3.99E-11 178 25.53 22.05 10.3 KM Plot
PCPG rs55778373 chr21:38573246 G/A 1.11E-16 175 24.85 25.63 3.17 KM Plot
PCPG rs55794529 chr7:105165747 T/C 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs55801944 chr4:110973113 C/G 0 175 26.88 18.93 2.93 KM Plot
PCPG rs55807365 chr16:1667083 C/A 0 175 25.53 27.33 2.93 KM Plot
PCPG rs55808121 chr2:236194046 T/C 2.27E-7 175 25.97 25.05 3.07 KM Plot